PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG348800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 146aa    MW: 15512.4 Da    PI: 6.4981
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG348800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS41.91.6e-135122262371
                 GRAS 262 eyysalfdsleaklpreseerikvEre.llgreivnvvacegaerrerhetlekWrerlee..aG......Fk.pvplsekaakqaklll 341
                          +yy +lfdsl+a+ +++ +e ++v+ +  l+ ei+nv+a    +       +++Wrer ++   G      +  +++ + + a+qa+lll
  Pavir.1NG348800.1.p   5 HYYYVLFDSLDASCSEDRQEHHVVDPApALSGEIRNVLAVGAPA---TSSPAASWRERSSSrsRGsacaasLAsSAATQASDAAQASLLL 91 
                          8***********************965389**********9998...7888999*99976522331111112212333444567899*** PP

                 GRAS 342 rkvksdgyrveeesgslv.lgWkdrpLvsvS 371
                           +++  gy++ ee+g+l  lgWkd  L+++S
  Pavir.1NG348800.1.p  92 GMFPTGGYTLVEENGALEqLGWKDLCLLTAS 122
                          *****************99**********99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035145.3E-115122IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MRVPHYYYVL FDSLDASCSE DRQEHHVVDP APALSGEIRN VLAVGAPATS SPAASWRERS  60
SSRSRGSACA ASLASSAATQ ASDAAQASLL LGMFPTGGYT LVEENGALEQ LGWKDLCLLT  120
ASTRSPIRGQ ISNIWYLSMP LVHCR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615402.17e-31PREDICTED: protein SCARECROW 1
SwissprotQ2RB599e-33SCR1_ORYSJ; Protein SCARECROW 1
TrEMBLA0A0E0BMX43e-34A0A0E0BMX4_9ORYZ; Uncharacterized protein
STRINGLOC_Os11g03110.12e-30(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.16e-21GRAS family protein